💻 CLI Commands

Command	Subcommands	Description
init	4	Project initialization (wizard, check, skills, hooks)
agent	8	Agent lifecycle (spawn, list, status, stop, metrics, pool, health, logs)
swarm	6	Swarm coordination (init, start, status, stop, scale, coordinate)
memory	12	Memory operations (init, store, retrieve, search --build-hnsw, list, delete, stats, configure, cleanup, compress, export, import)
mcp	9	MCP server (start, stop, status, health, restart, tools, toggle, exec, logs)
task	6	Task management (create, list, status, cancel, assign, retry)
session	7	Session management (list, save, restore, delete, export, import, current)
config	7	Configuration (init, get, set, providers, reset, export, import)
status	3	System status with watch mode (agents, tasks, memory)
workflow	6	Workflow execution (run, validate, list, status, stop, template)
hooks	32	Self-learning hooks (pre/post-edit, pre/post-command, route, explain, pretrain, session-, intelligence/, worker/*, progress)
hive-mind	6	Queen-led coordination (init, spawn, status, task, optimize-memory, shutdown)
migrate	5	V2→V3 migration (status, run, verify, rollback, breaking)
neural	5	Neural pattern training (train, status, patterns, predict, optimize)
security	6	Security scanning (scan, audit, cve, threats, validate, report)
performance	5	Performance profiling (benchmark, profile, metrics, optimize, report)
providers	5	AI providers (list, add, remove, test, configure)
plugins	5	Plugin management (list, install, uninstall, enable, disable)
deployment	5	Deployment management (deploy, rollback, status, environments, release)
embeddings	13	Vector embeddings with ONNX, hyperbolic space, neural substrate
daemon	5	Background workers (start, stop, status, trigger, enable)
progress	4	V3 implementation progress (check, sync, summary, watch)
claims	4	Authorization (check, grant, revoke, list)
analyze	6	Code analysis (diff, risk, classify, reviewers, file-risk, stats)
issues	10	Human-agent claims (list, claim, release, handoff, status, stealable, steal, load, rebalance, board)
transfer-store	4	Pattern marketplace via IPFS (list, search, download, publish)
update	2	Auto-update system (check, apply)
route	3	Intelligent routing (task, explain, coverage)